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</o:shapelayout></xml><![endif]--></head><body lang=EN-CA link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Hi All,<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>We seem to be running into some indexer issues, just wondering if anyone else is experiencing the same. On a full index, all seems to go well for 100’s of eprints, after which we are getting piles of pdftotext errors. Post-index, content for the eprints noted in the errors is (predictably) not in the index. Example run at the bottom, any suggestions on what might be happening would be welcome,<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal>Cheers,<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Casey<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal>Example run:<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>eprints@puppy:~/bin$ ./epadmin reindex research_eprints eprint --verbose<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Starting EPrints Repository.<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Connecting to DB ... done.<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>You are about to reindex "eprint" in the research_eprints repository.<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>This can take some time.<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Number of records in set: 3980<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Continue [y/n] ? es<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Exception: Unable to get write lock on /usr/share/eprints3/archives/research_eprints/var/xapian: already locked<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Indexed item: eprint/1<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Indexed item: eprint/3<o:p></o:p></p><p class=MsoNormal>...<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Indexed item: eprint/1488<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Error 255 from pdftotext command: \/usr\/bin\/pdftotext -enc UTF-8 -layout \/usr\/share\/eprints3\/archives\/research_eprints\/documents\/disk0\/00\/00\/14\/90\/01\/Whelan_Maudie\.pdf \/tmp\/jdeN7U21yV\/Whelan_Maudie\.txt at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/BackCompatibility.pm line 463<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Platform::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'TARGET', '/tmp/jdeN7U21yV/Whelan_Maudie.txt', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x66d6300)', 'SOURCE', 'File::Temp=GLOB(0x6d3ebd0)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1994<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'SOURCE', 'File::Temp=GLOB(0x6d3ebd0)', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x66d6300)', 'TARGET', '/tmp/jdeN7U21yV/Whelan_Maudie.txt') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Convert/PlainText.pm line 141<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Convert::PlainText::export('EPrints::Plugin::Convert::PlainText=HASH(0x6711160)', 'File::Temp::Dir=HASH(0x66d6300)', 'EPrints::DataObj::Document=HASH(0x67d0430)', 'text/plain') called at (eval 102) line 137<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Config::research_eprints::__ANON__('repository', 'EPrints::Repository=HASH(0x37ed110)', 'fields', 'ARRAY(0x67c5e40)', 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6f74250)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1551<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::run_trigger('EPrints::Repository=HASH(0x37ed110)', 11, 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', 'fields', 'ARRAY(0x67c5e40)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 68<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::_index_fields('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', 'ARRAY(0x67c5e40)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 37<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::index_all('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)') called at ./epadmin line 1992<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::__ANON__('EPrints::Repository=HASH(0x37ed110)', 'EPrints::DataSet=HASH(0x3f8d198)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', undef) called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/List.pm line 664<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::List::map('EPrints::List=HASH(0x2952a48)', 'CODE(0x358c368)') called at ./epadmin line 1998<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::reindex('research_eprints', 'eprint') called at ./epadmin line 344<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Error 255 from pdftotext command: \/usr\/bin\/pdftotext -enc UTF-8 -layout \/usr\/share\/eprints3\/archives\/research_eprints\/documents\/disk0\/00\/00\/14\/90\/03\/Whelan_Maudie\.pdf \/tmp\/jdeN7U21yV\/Whelan_Maudie\.txt at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/BackCompatibility.pm line 463<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Platform::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'TARGET', '/tmp/jdeN7U21yV/Whelan_Maudie.txt', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x66d6300)', 'SOURCE', 'File::Temp=GLOB(0x7137318)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1994<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'SOURCE', 'File::Temp=GLOB(0x7137318)', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x66d6300)', 'TARGET', '/tmp/jdeN7U21yV/Whelan_Maudie.txt') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Convert/PlainText.pm line 141<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Convert::PlainText::export('EPrints::Plugin::Convert::PlainText=HASH(0x6e40e20)', 'File::Temp::Dir=HASH(0x66d6300)', 'EPrints::DataObj::Document=HASH(0x6c02ec8)', 'text/plain') called at (eval 102) line 137<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Config::research_eprints::__ANON__('repository', 'EPrints::Repository=HASH(0x37ed110)', 'fields', 'ARRAY(0x67c5e40)', 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6f74250)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1551<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::run_trigger('EPrints::Repository=HASH(0x37ed110)', 11, 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', 'fields', 'ARRAY(0x67c5e40)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 68<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::_index_fields('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', 'ARRAY(0x67c5e40)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 37<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::index_all('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)') called at ./epadmin line 1992<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::__ANON__('EPrints::Repository=HASH(0x37ed110)', 'EPrints::DataSet=HASH(0x3f8d198)', 'EPrints::DataObj::EPrint=HASH(0x6f74250)', undef) called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/List.pm line 664<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::List::map('EPrints::List=HASH(0x2952a48)', 'CODE(0x358c368)') called at ./epadmin line 1998<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::reindex('research_eprints', 'eprint') called at ./epadmin line 344<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Indexed item: eprint/1503<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Error 255 from pdftotext command: \/usr\/bin\/pdftotext -enc UTF-8 -layout \/usr\/share\/eprints3\/archives\/research_eprints\/documents\/disk0\/00\/00\/15\/04\/01\/Emberley\-Burke_Wanda\.pdf \/tmp\/diwwe8oTDs\/Emberley\-Burke_Wanda\.txt at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/BackCompatibility.pm line 463<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Platform::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'TARGET', '/tmp/diwwe8oTDs/Emberley-Burke_Wanda.txt', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x6af6f88)', 'SOURCE', 'File::Temp=GLOB(0x70c9260)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1994<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'SOURCE', 'File::Temp=GLOB(0x70c9260)', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x6af6f88)', 'TARGET', '/tmp/diwwe8oTDs/Emberley-Burke_Wanda.txt') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Convert/PlainText.pm line 141<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Convert::PlainText::export('EPrints::Plugin::Convert::PlainText=HASH(0x6993008)', 'File::Temp::Dir=HASH(0x6af6f88)', 'EPrints::DataObj::Document=HASH(0x6b9ae38)', 'text/plain') called at (eval 102) line 137<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Config::research_eprints::__ANON__('repository', 'EPrints::Repository=HASH(0x37ed110)', 'fields', 'ARRAY(0x65d2750)', 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1551<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::run_trigger('EPrints::Repository=HASH(0x37ed110)', 11, 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', 'fields', 'ARRAY(0x65d2750)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 68<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::_index_fields('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', 'ARRAY(0x65d2750)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 37<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::index_all('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)') called at ./epadmin line 1992<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::__ANON__('EPrints::Repository=HASH(0x37ed110)', 'EPrints::DataSet=HASH(0x3f8d198)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', undef) called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/List.pm line 664<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::List::map('EPrints::List=HASH(0x2952a48)', 'CODE(0x358c368)') called at ./epadmin line 1998<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::reindex('research_eprints', 'eprint') called at ./epadmin line 344<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal style='text-indent:36.0pt'>Error 255 from pdftotext command: \/usr\/bin\/pdftotext -enc UTF-8 -layout \/usr\/share\/eprints3\/archives\/research_eprints\/documents\/disk0\/00\/00\/15\/04\/03\/Emberley\-Burke_Wanda\.pdf \/tmp\/diwwe8oTDs\/Emberley\-Burke_Wanda\.txt at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/BackCompatibility.pm line 463<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Platform::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'TARGET', '/tmp/diwwe8oTDs/Emberley-Burke_Wanda.txt', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x6af6f88)', 'SOURCE', 'File::Temp=GLOB(0x71b74a8)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1994<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::exec('EPrints::Repository=HASH(0x37ed110)', 'pdftotext', 'SOURCE', 'File::Temp=GLOB(0x71b74a8)', 'TARGET_DIR', 'File::Temp::Dir=HASH(0x6af6f88)', 'TARGET', '/tmp/diwwe8oTDs/Emberley-Burke_Wanda.txt') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Convert/PlainText.pm line 141<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Convert::PlainText::export('EPrints::Plugin::Convert::PlainText=HASH(0x686c748)', 'File::Temp::Dir=HASH(0x6af6f88)', 'EPrints::DataObj::Document=HASH(0x71fefb0)', 'text/plain') called at (eval 102) line 137<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Config::research_eprints::__ANON__('repository', 'EPrints::Repository=HASH(0x37ed110)', 'fields', 'ARRAY(0x65d2750)', 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)') called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/Repository.pm line 1551<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Repository::run_trigger('EPrints::Repository=HASH(0x37ed110)', 11, 'dataobj', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', 'fields', 'ARRAY(0x65d2750)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 68<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::_index_fields('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', 'ARRAY(0x65d2750)') called at /usr/share/eprints3/perl_lib/EPrints/Plugin/Event/Indexer.pm line 37<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::Plugin::Event::Indexer::index_all('EPrints::Plugin::Event::Indexer=HASH(0x64f7660)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)') called at ./epadmin line 1992<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::__ANON__('EPrints::Repository=HASH(0x37ed110)', 'EPrints::DataSet=HASH(0x3f8d198)', 'EPrints::DataObj::EPrint=HASH(0x6ed82c8)', undef) called at /mnt/eprintsdrive/eprints3/bin/../perl_lib/EPrints/List.pm line 664<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> EPrints::List::map('EPrints::List=HASH(0x2952a48)', 'CODE(0x358c368)') called at ./epadmin line 1998<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'> main::reindex('research_eprints', 'eprint') called at ./epadmin line 344<o:p></o:p></p><p class=MsoNormal style='text-indent:36.0pt'><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>-----------------------------------------------<o:p></o:p></p><p class=MsoNormal>Casey Hilliard<o:p></o:p></p><p class=MsoNormal>System Administrator <o:p></o:p></p><p class=MsoNormal>Library Information Technology Services (LITS)<o:p></o:p></p><p class=MsoNormal>Memorial University of Newfoundland<o:p></o:p></p><p class=MsoNormal>Ph: (709)864-6267<o:p></o:p></p><p class=MsoNormal>Ce: (709)699-3041<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>