[EP-tech] DataCite Doi Plugin

Enio Carboni enio.carboni at gmail.com
Fri Jun 23 09:05:22 BST 2017


If you like to use that snippet then you have to manage utf8 both in
source and output text.

I just changed the code to
https://gist.github.com/eniocarboni/046a4d1231eb726f22716e5300dace41
 
I added the 2 lines:

    use utf8;
    binmode(STDOUT,'utf8');

Cheers,
  Enio
Il 23/06/2017 02:57, Alfredo Cosco ha scritto:
> Great, now I'm trying on two docs:
>
> http://www.fedoa.unina.it/89/
>
> and 
>
> http://www.fedoa.unina.it/1125/
>
> In the first case the DOI is coined and minted.
>
> The second one fails:
> [xml] xml error: Invalid byte 2 of 3-byte UTF-8 sequence.
>
> That's probably beacause the filed title contains an accented letter:
>
> <title>Regis servitium nostra mercatura: culture e linguaggi della
> fiscalit� nella Napoli aragonese</title>
>
> I suppose that we need to force the field contents to utf-8 before
> sending it to datacite, don't you?
>
> Thanks,
> Alfredo
>
>
>
>
>
>
>
> 2017-06-22 17:33 GMT+02:00 Enio Carboni <enio.carboni at gmail.com
> <mailto:enio.carboni at gmail.com>>:
>
>     Yes only metadata.
>
>     I just changed the code to mint the doi too.
>
>     May you change the the code in
>     cfg/plugins/EPrints/Plugin/Event/DataCiteEvent.pm
>
>     in "sub datacite_request" before "return $res->code();" add this 2
>     line to debug better
>
>         print STDERR $req->as_string;
>
>         print STDERR $res_as_string;
>
>     and launch the bin script
>
>
>     Il 22/06/2017 16:54, Alfredo Cosco ha scritto:
>>     Hello,
>>     i just changed the api link to the test one:
>>
>>     https://mds.test.datacite.org/metadata
>>     <https://mds.test.datacite.org/metadata>
>>      
>>     This test script works.
>>
>>     ---> HTTP/1.1 201 Created
>>
>>     If I log in to datacite test env
>>     (https://mds.test.datacite.org) I see the new record, created but
>>     not minted, the only message I can see with something like a
>>     debug is a laconic:  [Not minted because] "not registered in DOI
>>     system" 
>>
>>     Thank you,
>>     A.
>>
>>
>>
>>     2017-06-22 15:11 GMT+02:00 Enio Carboni <enio.carboni at gmail.com
>>     <mailto:enio.carboni at gmail.com>>:
>>
>>         You can see the full test script at
>>         https://gist.github.com/eniocarboni/046a4d1231eb726f22716e5300dace41
>>         <https://gist.github.com/eniocarboni/046a4d1231eb726f22716e5300dace41>
>>
>>
>>         Il 22/06/2017 14:51, Enio Carboni ha scritto:
>>>
>>>         Hi Alfredo,
>>>
>>>          May you test this perl script to register your metadata
>>>         (It's a plugin code extract)
>>>
>>>         Replace <YOUR_USER> e <YOUR_PASS> with your real user/pass
>>>
>>>         I successfully tested the script (exit: HTTP/1.1 201 Created)
>>>
>>>
>>>         Il 22/06/2017 11:32, Alfredo Cosco ha scritto:
>>>>         The  number  "is special test prefix 10.5072 available to
>>>>         all datacentres."
>>>>         (see https://mds.datacite.org/static/apidoc#tocAnchor-9
>>>>         <https://mds.datacite.org/static/apidoc#tocAnchor-9> )
>>>>
>>>>         There are some test records registered by a the previous
>>>>         admin, probably by hand, and they are handled:
>>>>         https://handle.test.datacite.org/10.5072/UNINA/FEDOA/1910?noredirect=on
>>>>         <https://handle.test.datacite.org/10.5072/UNINA/FEDOA/1910?noredirect=on>
>>>>
>>>>         I also supposed that the slash in repoid was wrong, so i
>>>>         canghed with: UNINA-FEDOA
>>>>
>>>>         But the result is the same.
>>>>         Thanks,
>>>>         Alfredo
>>>>
>>>>
>>>>
>>>>         2017-06-21 14:37 GMT+02:00 Enio Carboni
>>>>         <enio.carboni at gmail.com <mailto:enio.carboni at gmail.com>>:
>>>>
>>>>             Well, the export is ok, so now:
>>>>
>>>>              are you sure your doi prefix?
>>>>
>>>>             On DataCite APIs i see for metadata "Response code" (
>>>>             https://mds.datacite.org/static/apidoc#tocAnchor-18
>>>>             <https://mds.datacite.org/static/apidoc#tocAnchor-18> ) :
>>>>
>>>>
>>>>                         Response statuses
>>>>
>>>>                 |201 Created|- operation successful
>>>>
>>>>                 *|400 Bad Request|**- invalid XML, wrong prefi*x
>>>>
>>>>                 |401 Unauthorized|- no login
>>>>
>>>>                 |403 Forbidden|- login problem, quota exceeded
>>>>
>>>>                 |500 Internal Server Error|- server internal error,
>>>>                 try later and if problem persists please contact us
>>>>
>>>>             So i check your prefix and i don't found none, you can
>>>>             see at https://search.datacite.org/api
>>>>             <https://search.datacite.org/api> :
>>>>             Es:
>>>>
>>>>               * https://search.datacite.org/api?q=prefix:10.5072
>>>>                 <https://search.datacite.org/api?q=prefix:10.5072> or
>>>>               * https://search.datacite.org/api?q=UNINA%20and%20FEDOA
>>>>                 <https://search.datacite.org/api?q=UNINA%20and%20FEDOA>
>>>>
>>>>
>>>>
>>>>             Il 21/06/2017 12:43, Alfredo Cosco ha scritto:
>>>>>             <resource xmlns="http://datacite.org/schema/kernel-2.2
>>>>>             <http://datacite.org/schema/kernel-2.2>" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance
>>>>>             <http://www.w3.org/2001/XMLSchema-instance>" xsi:schemaLocation="http://datacite.org/schema/kernel-2.2
>>>>>             <http://datacite.org/schema/kernel-2.2>
>>>>>             http://schema.datacite.org/meta/kernel-2.2/metadata.xsd
>>>>>             <http://schema.datacite.org/meta/kernel-2.2/metadata.xsd>">
>>>>>             <identifier identifierType="DOI">10.5072/UNINA/FEDOA/89</identifier>
>>>>>             <creators>
>>>>>             <creator>
>>>>>             <creatorName>Delle Donne, Roberto</creatorName>
>>>>>             </creator>
>>>>>             </creators>
>>>>>             <titles>
>>>>>             <title>
>>>>>             Autopubblicazione e pubblicazione coordinata di testi
>>>>>             storici in formato digitale
>>>>>             </title>
>>>>>             </titles>
>>>>>             <publisher>UNINA/FEDOA</publisher>
>>>>>             <publicationYear>2006</publicationYear>
>>>>>             <resourceType resourceTypeGeneral="Text">BookSection</resourceType>
>>>>>             <alternateIdentifiers>
>>>>>             <alternateIdentifier alternateIdentifierType="URL">http://www.fedoa.unina.it/89/
>>>>>             <http://www.fedoa.unina.it/89/></alternateIdentifier>
>>>>>             </alternateIdentifiers>
>>>>>             </resource>
>>>>>
>>>>>             2017-06-21 12:11 GMT+02:00 Enio Carboni
>>>>>             <enio.carboni at gmail.com <mailto:enio.carboni at gmail.com>>:
>>>>>
>>>>>                 Can you check the output of DataCiteXML export
>>>>>                 plugin on some of your eprintid?
>>>>>
>>>>>                 You can use url like this:
>>>>>
>>>>>                 <YOUR_EPRINT_BASE_URL>/cgi/export/eprint/<EPRINT_ID>/DataCiteXML/datacite.xml
>>>>>
>>>>>                 The plugin use this export to register metadata
>>>>>                 first then if all ok coin doi
>>>>>
>>>>>
>>>>>                 Il 21/06/2017 11:39, Alfredo Cosco ha scritto:
>>>>>>                 Hello,
>>>>>>                 also using production credentials and api url the
>>>>>>                 error is the same.
>>>>>>
>>>>>>                 Thank you,
>>>>>>                 Alfredo
>>>>>>
>>>>>>                 2017-06-21 10:24 GMT+02:00 Enio Carboni
>>>>>>                 <enio.carboni at gmail.com
>>>>>>                 <mailto:enio.carboni at gmail.com>>:
>>>>>>
>>>>>>                     By reviewing the DataCite APIs on
>>>>>>                     https://mds.datacite.org/static/apidoc
>>>>>>                     <https://mds.datacite.org/static/apidoc> I no
>>>>>>                     longer see any mention on their test site
>>>>>>                     (https://mds.test.datacite.org/
>>>>>>                     <https://mds.test.datacite.org/>) while I see
>>>>>>                     an addition of the parameter "testMode=true"
>>>>>>                     directly in the POST url for test purposes.
>>>>>>
>>>>>>                     Could you try it directly with the DataCite
>>>>>>                     production url (https://mds.datacite.org/)?
>>>>>>
>>>>>>
>>>>>>                     I will update the code as soon as possible to
>>>>>>                     reflect the "testMode" parameter if the rest
>>>>>>                     is still valid
>>>>>>
>>>>>>
>>>>>>                     Il 21/06/2017 00:39, Alfredo Cosco ha scritto:
>>>>>>>                     I used the default string:
>>>>>>>
>>>>>>>                     $c->{datacitedoi}{apiurl} =
>>>>>>>                     "https://mds.test.datacite.org/
>>>>>>>                     <https://mds.test.datacite.org/>";
>>>>>>>
>>>>>>>                     2017-06-20 22:21 GMT+02:00 Enio Carboni
>>>>>>>                     <enio.carboni at gmail.com
>>>>>>>                     <mailto:enio.carboni at gmail.com>>:
>>>>>>>
>>>>>>>                         What value did you put in
>>>>>>>                         "$c->{datacitedoi}{apiurl}" in
>>>>>>>                         cfg/cgf.d/z_datacitedoi.pl
>>>>>>>                         <http://z_datacitedoi.pl>?
>>>>>>>
>>>>>>>                         This URL should end with a '/' otherwise
>>>>>>>                         the url for the coin unfortunately is
>>>>>>>                         not done well.
>>>>>>>
>>>>>>>                          Let me know if there are any news
>>>>>>>                           Enio
>>>>>>>
>>>>>>>                         Il 20/06/2017 19:48, Alfredo Cosco ha
>>>>>>>                         scritto:
>>>>>>>>                         Hi All, hi Enio,
>>>>>>>>                         I installed your plugin and I'm trying
>>>>>>>>                         to launch the bin script to test it.
>>>>>>>>                         I get this error message from the script:
>>>>>>>>
>>>>>>>>                         Connecting to DB ... done.
>>>>>>>>                         [doi=10.5072/UNINA.FEDOA/1125] Metadata
>>>>>>>>                         registration response from datacite
>>>>>>>>                         api: response_code=400
>>>>>>>>                         [doi=10.5072/UNINA.FEDOA/1125]
>>>>>>>>                         rescheduling event
>>>>>>>>                         Error HTTP_LOCKED while trying to coin
>>>>>>>>                         doi for eprint 1125
>>>>>>>>                         Ending EPrints Repository.
>>>>>>>>
>>>>>>>>                         Thanks,
>>>>>>>>                         Alfredo
>>>>>>>>
>>>>>>>>                         2017-06-16 17:09 GMT+02:00 Enio Carboni
>>>>>>>>                         <enio.carboni at gmail.com
>>>>>>>>                         <mailto:enio.carboni at gmail.com>>:
>>>>>>>>
>>>>>>>>                             I use my own version last year
>>>>>>>>                             forked from eprints/datasite but
>>>>>>>>                             with the news of the fork in eprintsug
>>>>>>>>
>>>>>>>>                             You may try at
>>>>>>>>                             https://github.com/eniocarboni/datacite
>>>>>>>>                             <https://github.com/eniocarboni/datacite>
>>>>>>>>                             where i also add a manual script to
>>>>>>>>                             coin in bin/datacitecoin so we can
>>>>>>>>                             test better.
>>>>>>>>
>>>>>>>>                             As I wrote the last edit is
>>>>>>>>                             November 2016 so I hope the plugin
>>>>>>>>                             can still be fine
>>>>>>>>
>>>>>>>>                               Enio Carboni
>>>>>>>>
>>>>>>>>
>>>>>>>>                             Il 16/06/2017 16:36, Alfredo Cosco
>>>>>>>>                             ha scritto:
>>>>>>>>>                             Hello,
>>>>>>>>>                             no, I didn't receive any suggestion.
>>>>>>>>>                             But now at least I can read an
>>>>>>>>>                             error log.
>>>>>>>>>                             So, I verified my plugin and is in
>>>>>>>>>                             sync with github repo.
>>>>>>>>>
>>>>>>>>>                             I verified all connection
>>>>>>>>>                             parameters and set up the script
>>>>>>>>>                             to make tests on datacite: 
>>>>>>>>>                             $c->{datacitedoi}{prefix} = "10.5072";
>>>>>>>>>                             $c->{datacitedoi}{apiurl} =
>>>>>>>>>                             "https://mds.test.datacite.org";
>>>>>>>>>
>>>>>>>>>                             then I restarted the indexer.
>>>>>>>>>
>>>>>>>>>                             Now when I try to coin a DOI the
>>>>>>>>>                             indexer.log add this message
>>>>>>>>>
>>>>>>>>>                             [urn:uuid:86176f74-3e5f-466c-8680-94b13876b8ff]
>>>>>>>>>                             Event::DataCiteEvent::datacite_doi:
>>>>>>>>>                             Error during execution:
>>>>>>>>>                             XML::LibXML::Node::appendChild()
>>>>>>>>>                             -- nNode is not a blessed SV
>>>>>>>>>                             reference at
>>>>>>>>>                             /usr/share/eprints3/archives/sire/cfg/plugins/EPrints/Plugin/Export/DataCiteXML.pm
>>>>>>>>>                             line 73. 
>>>>>>>>>
>>>>>>>>>                             Thanks
>>>>>>>>>                             Alfedo
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>                             2017-06-13 22:43 GMT+02:00 Tomasz
>>>>>>>>>                             Neugebauer
>>>>>>>>>                             <Tomasz.Neugebauer at concordia.ca
>>>>>>>>>                             <mailto:Tomasz.Neugebauer at concordia.ca>>:
>>>>>>>>>
>>>>>>>>>                                 I hope that Alfredo received
>>>>>>>>>                                 some help from back in April,
>>>>>>>>>                                 I didn’t see it on the list. 
>>>>>>>>>
>>>>>>>>>                                 I found installing the
>>>>>>>>>                                 DataCite plugin difficult as
>>>>>>>>>                                 well. I got it work
>>>>>>>>>                                 eventually, but it was not
>>>>>>>>>                                 trivial.
>>>>>>>>>
>>>>>>>>>                                 I think that the Bazaar plugin
>>>>>>>>>                                 is probably out of synch with
>>>>>>>>>                                 all the fixes that were
>>>>>>>>>                                 applied in the last year or so
>>>>>>>>>                                 to the github code.
>>>>>>>>>
>>>>>>>>>                                 Here is a couple of points to
>>>>>>>>>                                 remember when troubleshooting
>>>>>>>>>                                 DataCite plugin (something I
>>>>>>>>>                                 was doing today):
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 1)      The indexer does much
>>>>>>>>>                                 of the work, so if you make a
>>>>>>>>>                                 change to the DataCite Event
>>>>>>>>>                                 script, you have to restart
>>>>>>>>>                                 the indexer before you see a
>>>>>>>>>                                 change.  Today, I had to make
>>>>>>>>>                                 a change to accommodate this
>>>>>>>>>                                 issue:
>>>>>>>>>                                 https://github.com/eprintsug/DataCiteDoi/issues/13
>>>>>>>>>                                 <https://github.com/eprintsug/DataCiteDoi/issues/13>
>>>>>>>>>                                 for example, since I was
>>>>>>>>>                                 minting a DOI for an item with
>>>>>>>>>                                 a title in French.
>>>>>>>>>
>>>>>>>>>                                 2)      The error/logging for
>>>>>>>>>                                 minting seems mostly to be
>>>>>>>>>                                 stored with the indexer.log in
>>>>>>>>>                                 var folder.
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 Thanks to David for flagging
>>>>>>>>>                                 issue 13!  I spent half the
>>>>>>>>>                                 day trying to figure this one
>>>>>>>>>                                 out before I found the issue
>>>>>>>>>                                 post.  
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 Tomasz
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 *From:*eprints-tech-bounces at ecs.soton.ac.uk
>>>>>>>>>                                 <mailto:eprints-tech-bounces at ecs.soton.ac.uk>
>>>>>>>>>                                 [mailto:eprints-tech-bounces at ecs.soton.ac.uk
>>>>>>>>>                                 <mailto:eprints-tech-bounces at ecs.soton.ac.uk>]
>>>>>>>>>                                 *On Behalf Of *Alfredo Cosco
>>>>>>>>>                                 *Sent:* April-10-17 3:33 AM
>>>>>>>>>                                 *To:*
>>>>>>>>>                                 eprints-tech at ecs.soton.ac.uk
>>>>>>>>>                                 <mailto:eprints-tech at ecs.soton.ac.uk>
>>>>>>>>>                                 *Subject:* [EP-tech] DataCite
>>>>>>>>>                                 Doi Plugin
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 Hi all,
>>>>>>>>>
>>>>>>>>>                                 i'm trying to configure
>>>>>>>>>                                 DataCite Doi plugin found on
>>>>>>>>>                                 eprintsug github page:
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 https://github.com/eprintsug/DataCiteDoi
>>>>>>>>>                                 <https://github.com/eprintsug/DataCiteDoi>
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 The plugin seems
>>>>>>>>>                                 correctly installed, the
>>>>>>>>>                                 button to coin a DOI appears
>>>>>>>>>                                 but seems that it doesn't work.
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 I  set the plugin with the
>>>>>>>>>                                 test API address:
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 https://mds.test.datacite.org
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 I set it with my datacite user
>>>>>>>>>                                 and pw. 
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 But new DOIs do not appear in
>>>>>>>>>                                 the list of generated DOI.
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 Please help me.
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                 Thanks,
>>>>>>>>>
>>>>>>>>>                                 Alfredo
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>                                  
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>                                 *** Options:
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>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
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>>>>>>>>>                             *** EPrints community wiki: http://wiki.eprints.org/
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>>>>>>>>
>>>>>>>>
>>>>>>>>                             *** Options:
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>>>>>>>>                             http://forum.eprints.org/
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
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>>>>>>>
>>>>>>>
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>>>>>>>
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>>>>>>
>>>>>>
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>>>>>>                     http://wiki.eprints.org/
>>>>>>                     *** EPrints developers Forum:
>>>>>>                     http://forum.eprints.org/
>>>>>>
>>>>>>
>>>>>>
>>>>>>
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>>>>>
>>>>>
>>>>>                 *** Options:
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>>>>>
>>>>>
>>>>>
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>>>>
>>>>
>>>>             *** Options:
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>>>>
>>>>
>>>>
>>>>
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>>>
>>>
>>>
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>>
>>
>>         *** Options:
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>>
>>
>>
>>
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