[EP-tech] fail to import PubMedID
Hiroshi Watabe
hwatabe at m.tohoku.ac.jp
Mon Nov 7 01:27:06 GMT 2016
Dear all,
It seems PubMed only accepts https now and I cannot import PubMed ID
anymore. I got the following warning message.
Unhandled warning in Import::PubMedID: http error : Unknown IO error
I modified PubMedID.pm as follows but no success.
27c27
< $self->{EFETCH_URL} =
'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&retmode=xml&rettype=full';
---
> $self->{EFETCH_URL} =
> 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&retmode=xml&rettype=full';
Error message is as follows;
Unhandled exception in Import::PubMedID: Could not create file parser
context for file
Could you help me?
Hiroshi
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