[EP-tech] Re: Import Medatada and Files

Edwin Gamez edwingamez19 at gmail.com
Tue Sep 22 21:14:50 BST 2015


Thanks everyone for your help.

Did not know the method from the command line. I'll try to do the two ways.


Regards.

2015-09-22 13:47 GMT-06:00 Adam Field <af05v at ecs.soton.ac.uk>:

> If you have a large number of eprints in one xml file, it may be better to
> import from the command line.  See
> http://wiki.eprints.org/w/API:bin/import -- and note the 'parse-only'
> option, which will tell you of any errors, but won't actually do an import.
>
> --
> Adam Field
> Business Relationship Manager and Community Lead
> EPrints Services
>
> On 22 Sep 2015, at 18:46, Andy Reid <Andy.Reid at lshtm.ac.uk> wrote:
>
> You can put many eprints in one file
>
> <eprints>
>
>  <eprint>
> <type>
> article
> </type>
> ...
> </eprint>
> <eprint>
> ...
> </eprint>
> </eprints>
> Then import as 'Eprints XML' from the 'Manage Deposits' page.  There's an
> option to test without importing, so you can check your XML is clean and
> correct before committing.
>
> Andy
>
>
> >>> Edwin Gamez <edwingamez19 at gmail.com> 22 September 2015 18:28 >>>
> Hi Andy!
> I am new to working with Eprints.
>
> Now that you've followed the steps set me. How could it import?
>
> Thanks!
>
> 2015-09-22 10:30 GMT-06:00 Andy Reid <Andy.Reid at lshtm.ac.uk>:
>
>> If you do an export of 'EP3 with files Embedded' that will show you the
>> basic layout you need, and you just need to strip out the eprintID ,
>> documentID and fileID tags in order to have each of those entities to make
>> a template that will create them on the fly with new IDs. If you have
>> multiple files per eprint you probably want each file inside a separate
>> document tag.
>>
>> Here's one I prepared earlier:
>>
>>
>>
>> <eprints>
>>
>>  <eprint>
>> <type>
>> article
>> </type>
>> <publication_abbrev>
>> Am J Epidemiol
>> </publication_abbrev>
>> <publication>
>> American journal of epidemiology
>> </publication>
>> <issn>
>> 0002-9262
>> </issn>
>> <eissn>
>> 1476-6256
>> </eissn>
>> <isbn/>
>> <book_title/>
>> <pmid>
>> 26022663
>> </pmid>
>> <isi/>
>> <id_number>
>> 10.1093/aje/kwv010
>> </id_number>
>> <title>
>> Analysis of preventive interventions for malaria: exploring partial and
>> complete protection, and total and primary intervention effects
>> </title>
>> <date>
>> 2015
>> </date>
>> <volume/>
>> <number/>
>> <publisher/>
>> <place_of_pub/>
>> <pagerange/>
>> <creators>
>> <item>
>> <name>
>> <family>
>> Cairns
>> </family>
>> <given>
>> M
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Cheung
>> </family>
>> <given>
>> YB
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Xu
>> </family>
>> <given>
>> Y
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Asante
>> </family>
>> <given>
>> KP
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Owusu-Agyei
>> </family>
>> <given>
>> S
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Diallo
>> </family>
>> <given>
>> D
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Konate
>> </family>
>> <given>
>> AT
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Dicko
>> </family>
>> <given>
>> A
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Chandramohan
>> </family>
>> <given>
>> D
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Greenwood
>> </family>
>> <given>
>> B
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> <item>
>> <name>
>> <family>
>> Milligan
>> </family>
>> <given>
>> P
>> </given>
>> </name>
>> <id/>
>>
>> </item>
>> </creators>
>> <divisions>
>> <item>
>> ITDC
>> </item>
>> <item>
>> EPID
>> </item>
>> </divisions>
>> <ispublished>
>> pub
>> </ispublished>
>> <keywords/>
>> <abstract>
>> Event dependence, the phenomenon in which future risk depends on past
>> disease history, is not commonly accounted for in the statistical models
>> used by malaria researchers. However, recently developed methods for the
>> analysis of repeated events allow this to be done, while also accounting
>> for heterogeneity in risk and nonsusceptible subgroups. Accounting for
>> event dependence allows separation of the primary effect of an intervention
>> from its total effect, which is composed of its primary effect on risk of
>> disease and its secondary effect mediated by event dependence. To
>> illustrate these methods and show the insights they can provide, we have
>> reanalyzed 2 trials of seasonal malaria chemoprevention (SMC) in Boussé,
>> Burkina Faso, and Kati, Mali, in 2008-2009, as well as a trial of
>> intermittent preventive treatment of malaria in infants in Navrongo, Ghana,
>> in 2000-2004. SMC completely protects a large fraction of recipients, while
>> intermittent preventive treatment in infants provides modest partial
>> protection, consistent with the rationale of these 2 different
>> chemopreventive approaches. SMC has a primary effect that is substantially
>> greater than the total effect previously estimated by trials, with the
>> lower total effect mediated by negative event dependence. These methods
>> contribute to an understanding of the mechanisms of protection from these
>> interventions and could improve understanding of other tools to control
>> malaria, including vaccines.
>> </abstract>
>> <datestamp/>
>> <lastmod/>
>> <metadata_visibility>
>> show
>> </metadata_visibility>
>> <date_type>
>> published
>> </date_type>
>> <refereed>
>> TRUE
>> </refereed>
>> <official_url/>
>> <documents>
>> <document>
>> <mime_type/>
>> <format>
>> text
>> </format>
>> <language>
>> en
>> </language>
>> <security>
>> public
>> </security>
>> <license>
>> cc_by
>> </license>
>> <main/>
>> <content>
>> published
>> </content>
>> <files>
>> <file>
>> <datasetid>
>> document
>> </datasetid>
>> <filename>
>> Manuscript_32.zip
>> </filename>
>> <mime_type>
>> application/zip
>> </mime_type>
>> <hash>
>> 9900cfaca2bb473c1766f278dfae3937
>> </hash>
>> <hash_type>
>> MD5
>> </hash_type>
>> <filesize>
>> 425934
>> </filesize>
>> <mtime/>
>> <data encoding="base64">
>>
>> UEsDBBQAAAAIAPSGyUYMubkJHn8GACLiCAAnAAAAQ0FJUk5TIC0gZmluYWwgdmVyc2lvbiBhcyBzdWJtaXR0ZWQucGRm7P1ZDPNsuy4GCahacPlpD1oQQlv9Mg+243lI4gwe4jiT48SZnMnxlMROPCbZXbtARVtUoXJQKiZVKgeA6EnFIPWAIlHRVhvRgaoIKIOKoGpLK3GCBFJbBiHyft//r7X+/1u7e7HZh/WrvPZzx36e+7p9D9cdv8lb0iQZxhrUb0r/2r/+L/2vfkMy7E/oT7Ed/IbjfoNM/cizMv/v8tyfsAb6Hf9EsTj2PeWnn36DKD8dfmo2cQr76cf2lf/0y3b6DTL/iWTRX0a/QQY/YSiKMvjPA/UnEvsNsvqJYnCKIX4WaT+hv+l2f+NF7o9l/yjzrj9rQbA//Qb97YZRP/28/yn6DfBbSZNg/lCGowz6KxlBkL+SkeSvZfRXwT+UNVnsD2UEjv9qDY
>> ...
>> ...
>> ...
>>
>> uP/D1BLAQIAABQAAAAIAPSGyUYMubkJHn8GACLiCAAnAAAAAAAAAAAAAAAAAAAAAABDQUlSTlMgLSBmaW5hbCB2ZXJzaW9uIGFzIHN1Ym1pdHRlZC5wZGZQSwUGAAAAAAEAAQBVAAAAY38GAAAA
>> </data></file></files></document></documents>
>> </eprint>
>> </eprints>
>> >>> Edwin Gamez <edwingamez19 at gmail.com> 22 September 2015 17:08 >>>
>> Hello everyone.
>>
>> I wonder if there is any way to import the metadata along with the files.
>> You could do it through a script?
>>
>> Thanks everyone!
>>
>> *** Options: http://mailman.ecs.soton.ac.uk/mailman/listinfo/eprints-tech
>> *** Archive: http://www.eprints.org/tech.php/
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>>
>>
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>
>
>
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>
>
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